PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G035900.4
Common NameB456_003G035900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 257aa    MW: 29112.5 Da    PI: 4.6966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G035900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09170202632
                         HHHHHHHHHHHHHHHHHHHCTSCC.C....... CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.as.....k 32 
                          ++ErrRR+r+N++++ Lr+++Pk +      +
  Gorai.003G035900.4 170 LMAERRRRKRLNDRLSMLRSIVPKiSKfdverR 202
                         589********************9553565551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-7162196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.518164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-4170235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6170202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-7171195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00468206247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELSQHGFLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTTD  60
EIENPSFECP FSDQPYPFGD GFSVSEMDAS TSPFPPAHED YPSMVDDEDQ LGLLTTDHHH  120
QQQHSLEEMK HSCKVEMEQT INNIQGFNMG LFVEKKTKAK RLEGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKFDVE RRETDTRIDI QCATKPGLLL STVNTLEALG LEIQECVISC  240
FNDFSMQASC SENRGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469731.11e-172PREDICTED: transcription factor bHLH93 isoform X2
TrEMBLA0A0D2RG550.0A0A0D2RG55_G
STRINGVIT_00s1312g00010.t018e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.12e-33bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]